PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051427-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 396aa    MW: 44007.8 Da    PI: 4.6337
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051427-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-074252345
                      -HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45
                      +W++Ia++++ +Rt++++k++w+
  PSME_00051427-RA  4 RWALIAAHIP-RRTDNEIKNYWN 25
                      4*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.271132IPR017930Myb domain
SuperFamilySSF466892.12E-6334IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-10333IPR009057Homeodomain-like
PfamPF002495.9E-6426IPR001005SANT/Myb domain
CDDcd001671.26E-5425No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MISRWALIAA HIPRRTDNEI KNYWNSSIKK KLKLKYHFSN TNSKCNAPAS RCDRICRTDS  60
LVSHTHDDFT SSRSAQPCLD AMPERYQTRM NTFNAVTTGE NQFCDLGVLE LKQEQLVDQN  120
DDINQLISYF QNWIDDASTL LSTHESVSSH AAFQSLILPA QGLLHTCNTT KSPTCNELII  180
ESCRTTVPPV EAPGSANYSL GSIAITTPAA VEAEFLKEKI ENDGSSTSQY SCSNPTGYHC  240
PPVVDPGAYI VHEAGVSIVE DYESLYDKTT HQAACPQLSF LSQFGAHAIK WPVGHFNDFQ  300
AENDCRDRLD LRYDLNLGIP KYIYNDIKQR SCGSLQINEG GEIGDQREFS IIPHEEPNEN  360
PIPGILGGGG SAEFEFGDDI YNLSTAAVDL DEIYFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.12e-10myb domain protein 103